The Capodistrias Museum – Center of Capodistrian Studies is a non-profit organisation operated by the three organisations that own it. In accordance with the terms of the donation by Maria Desylla-Capodistria, the Capodistrias Museum is administered by a tripartite board of directors with a two-year term limit, which is comprised of the current presidents of the three cultural organisations to which it belongs (Corfu Reading Society, Philharmonic Society of Corfu, Society for Corfiot Studies).

For the period 2024-2025, the members of the board of directors are:

President: : Spyros Padovas (President of the Philharmonic Society of Corfu)
Vice-President: Periklis Pangratis (President of the Society for Corfiot Studies)
Secretary-Treasurer: Thanassis Makris (President of the Corfu Reading Society)